HsaEX0010990 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112540821-112547408:-
Coord C1 exon
chr4:112547285-112547408
Coord A exon
chr4:112541092-112541268
Coord C2 exon
chr4:112540821-112540955
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTTAAATTTCTTAGGGT
3' ss Score
8.22
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTTGAGTGTGAAAAGCTGATTCTTGTTGGGGATCCCAAACAGCTACCTCCTACTATTCAGGGTTCTGATGCAGCTCATGAAAATGGATTGGAACAAACTCTTTTTGATCGACTTTGCTTAATG
Seq A exon
GGTCACAAGCCAATTCTATTGAGAACTCAATACCGTTGTCATCCTGCAATCAGTGCTATTGCTAATGATCTGTTTTACAAAGGAGCCCTCATGAATGGTGTAACAGAAATAGAGCGGAGCCCTTTATTGGAATGGCTACCAACCCTGTGTTTTTATAATGTTAAAGGACTAGAACAG
Seq C2 exon
ATAGAAAGAGATAACAGCTTTCATAATGTGGCAGAAGCTACGTTTACACTCAAGCTGATTCAATCACTGATTGCAAGTGGAATAGCAGGCTCTATGATTGGTGTGATAACATTATACAAATCCCAGATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658-'66-53,'66-52,68-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
A:
PF130871=AAA_12=FE(31.0=100)
C2:
PF130871=AAA_12=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAAAGCTGATTCTTGTTGGG
R:
TGGGATTTGTATAATGTTATCACACC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development