MmuEX6074096 @ mm10
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130529690-130535475:+
Coord C1 exon
chr3:130529690-130529722
Coord A exon
chr3:130530097-130530132
Coord C2 exon
chr3:130535431-130535475
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTTTTCTTTGGCCAGGGA
3' ss Score
5.89
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTGACCCTGGATCATCTGCTGCAGGAATTAAG
Seq A exon
GGAGAACCTGGAGAATCTGGCCGCCCGGGGCAGAAG
Seq C2 exon
GGTGAACCAGGGCTGCCTGGGCTGCCTGGACTTCCGGGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'30-38,'30-36,32-38=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.8=63.6),PF0139113=Collagen=PU(11.5=54.5)
A:
PF0139113=Collagen=FE(11.5=100),PF0139113=Collagen=FE(17.2=100)
C2:
PF0139113=Collagen=FE(14.6=100),PF0139113=Collagen=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCTGGATCATCTGCTG
R:
TTATTCCCGGAAGTCCAGGCA
Band lengths:
75-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types