MmuEX6074096 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130232608-130238393:+
Coord C1 exon
chr3:130232608-130232640
Coord A exon
chr3:130233015-130233050
Coord C2 exon
chr3:130238349-130238393
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTTTTCTTTGGCCAGGGA
3' ss Score
5.89
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTGACCCTGGATCATCTGCTGCAGGAATTAAG
Seq A exon
GGAGAACCTGGAGAATCTGGCCGCCCGGGGCAGAAG
Seq C2 exon
GGTGAACCAGGGCTGCCTGGGCTGCCTGGACTTCCGGGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'18-19,'18-18,19-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.8=63.6),PF0139113=Collagen=PU(11.5=54.5)
A:
PF0139113=Collagen=FE(11.5=100),PF0139113=Collagen=FE(17.2=100)
C2:
PF0139113=Collagen=FE(14.6=100),PF0139113=Collagen=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCTGGATCATCTGCTG
R:
TTATTCCCGGAAGTCCAGGCA
Band lengths:
75-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: