MmuEX6074480 @ mm9
Exon Skipping
Gene
ENSMUSG00000004591 | Pkn2
Description
protein kinase N2 [Source:MGI Symbol;Acc:MGI:109211]
Coordinates
chr3:142484483-142492293:-
Coord C1 exon
chr3:142492148-142492293
Coord A exon
chr3:142491845-142492058
Coord C2 exon
chr3:142484483-142484668
Length
214 bp
Sequences
Splice sites
3' ss Seq
ATATCTCTTTTCCTAACAAGGCA
3' ss Score
5.48
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
Exon sequences
Seq C1 exon
CAAAACCTGTGATAAGCCCTCTTGAGCTTCGGATGGAAGAATTAAGACATCATTTTAAGATAGAATTTGCAGTAGCCGAAGGTGCAAAGAATGTCATGAAGTTACTTGGCTCAGGAAAAGTAACAGACAGAAAAGCGCTTTCAGAA
Seq A exon
GCACAAGCGAGATTTAATGAATCAAGTCAGAAGTTGGACCTTTTAAAGTATTCACTAGAGCAAAGGTTAAATGAGCTCCCCAGGAATCACCCCAAAAGCAGTGTCGTCATTGAGGAGCTTTCACTGGTTGCGTCACCAACCCTGAGTCCACGGCAGAGCATGCTGTCCACGCAGAACCAGTATAGCACACTGTCCAAGCCAGCGGCGCTAACCG
Seq C2 exon
GTACTTTGGAAGTTCGTCTTATGGGGTGCCAAGATATCCTAGAGAATGTACCTGGACGGTCAAAAGCAACGTCGGTAGCACTACCTGGGTGGAGTCCAAGTGACAACAGATCGTCTTTTATGAGCAGAACCAGCAAGAGTAAAAGTGGGAGTAGTCGCAACCTCCTGAAAACGGATGACTTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004591-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.264 C2=0.270
Domain overlap (PFAM):
C1:
PF0218511=HR1=PU(52.1=97.4),PF118963=DUF3416=PU(44.3=92.1)
A:
PF0218511=HR1=PD(46.5=45.8),PF118963=DUF3416=PD(54.4=59.7),PF051368=Phage_portal_2=PU(19.3=30.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCCCTCTTGAGCTTCGGA
R:
AGGTTGCGACTACTCCCACTT
Band lengths:
297-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: