DreEX6021829 @ danRer10
Exon Skipping
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25347210-25351651:-
Coord C1 exon
chr6:25351497-25351651
Coord A exon
chr6:25349510-25349723
Coord C2 exon
chr6:25347210-25347395
Length
214 bp
Sequences
Splice sites
3' ss Seq
ATTCAATCTTTGTCTTGCAGGCT
3' ss Score
8.51
5' ss Seq
CCGGTAACA
5' ss Score
5.92
Exon sequences
Seq C1 exon
TGACTACAAGCAAGCCCATCATCAGCCCTCTGGACCTGAGGATAGAGGAGCTGCGACATCACTACCGGATAGAGTCTGCTGTGGCCGATGGTGCCAAAAATGTGATGAAGCTATTGGGAACAGGAAAGGTGACAGAGAAGAAAGCTCATTCTGAG
Seq A exon
GCTCAAGCCCGCTTGAATGAGTCTAGTCAGAAGCTGGACTTGCTGAAGTTTTCTCTGGAGCAGAGGCTCAGCGAACTGCCCAAAAATCACCCAAAGGGCACCCTGATCATGGAGGAGTTAGCAATGGTGGCCTCCCCTCCTAACAGTCCCCGCCAAAGCATCATGTCCACCAGCAACCAGTACAGCACTGTGGCCAAACCTGCTGCCCTGACCG
Seq C2 exon
GCACATTAGACGTGAGGCTCATGGGCTGTCAGGACCTTCTGGAGAACGTCCCGGGTCGCTCGAAGACAGCATCTGTTTCTCTGCCCGGCTGGAGCCCTAGTGAAGCACGCTCTTCATTTATGAGCCGAGGAAACAAGAACAAATCTGGCAGCAGCAGAACCCTCTCCAAGTCTGATGATCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.568 C2=0.429
Domain overlap (PFAM):
C1:
PF154561=Uds1=FE(57.3=100),PF0218511=HR1=PU(53.4=75.0)
A:
PF154561=Uds1=PD(33.3=40.3),PF0218511=HR1=PD(43.8=44.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCAGCCCTCTGGACCTG
R:
TGCTGCTGCCAGATTTGTTCT
Band lengths:
294-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]