RnoEX0066435 @ rn6
Exon Skipping
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248771161-248779851:-
Coord C1 exon
chr2:248779706-248779851
Coord A exon
chr2:248779402-248779615
Coord C2 exon
chr2:248771161-248771346
Length
214 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTTTCCAAACAAGGCC
3' ss Score
5.3
5' ss Seq
CCGGTGTGT
5' ss Score
6.56
Exon sequences
Seq C1 exon
CAAAACCTGTGATAAGCCCTCTTGAGCTTCGAATGGAAGAATTAAGACATCATTTTAGGATAGAATTTGCAGTAGCCGAAGGTGCAAAGAATGTCATGAAATTACTTGGCTCAGGAAAAGTAACAGACAGAAAAGCGCTTTCAGAA
Seq A exon
GCCCAAGCAAGATTTAATGAATCAAGTCAGAAGTTGGACCTTTTAAAATATTCACTAGAGCAGAGGTTAAATGAACTCCCCAAGAATCACCCCAAAAGCAGTGTCGTCATTGAGGAGCTCTCCCTTGTTGCATCGCCAACCCTGAGTCCACGACAGAGTATGCTGTCCACGCAGAACCAGTACAGCACACTGTCCAAGCCAGCAGCACTAACCG
Seq C2 exon
GTACTTTGGAAGTTCGTCTCATGGGGTGCCAAGATATCCTGGAGAATGTCCCTGGACGGTCAAAAGCGACATCCGTAGCACTGCCTGGATGGAGTCCAAGTGAAAACAGATCATCGTTTATGAGCAGAACTAGTAAAAGTAAAAGTGGAAGCAGTCGCAACCTCCTGAAAACCGACGACTTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317-'24-13,'24-11,25-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.283 C2=0.255
Domain overlap (PFAM):
C1:
PF0218511=HR1=PU(53.4=79.6)
A:
PF0218511=HR1=PD(43.8=44.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCTTGAGCTTCGAATGG
R:
GGTTTTCAGGAGGTTGCGACT
Band lengths:
304-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]