GgaEX1044095 @ galGal4
Exon Skipping
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14127992-14131293:-
Coord C1 exon
chr8:14131148-14131293
Coord A exon
chr8:14130837-14131050
Coord C2 exon
chr8:14127992-14128177
Length
214 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTATTTTAAAAAGGCA
3' ss Score
5.69
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
CAAAACCTGTGATAAGCCCTCTTGAACTCCGAATGGAAGAACTACGGCATCATTTTAGGATAGAATATGCTGTTGCAGAAGGTGCAAAGAATGTGATGAAATTACTTGGATCTGGGAAGGTTACCGACAGAAAGGCACTTTCAGAA
Seq A exon
GCACAAGCAAGATTTAATGAATCAAGCCAGAAGTTGGACCTGTTAAAGTATTCACTGGAACAGAGATTGAATGAACTTCCTAAAAACCATCCCAAAAGTAGTATTATTATAGAGGAGCTTTCATTGGTCTCTTCACCCACATTAAGTCCTCGTCAAAGTGTAATATCTACTCAGAACCAATACAGTACACTGTCCAAACCAGCAGCTTTAACAG
Seq C2 exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'8-7,'8-6,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.111 C2=0.132
Domain overlap (PFAM):
C1:
PF0218511=HR1=PU(53.4=79.6)
A:
PF0218511=HR1=PD(43.8=44.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAATGGAAGAACTACGGCA
R:
GGACAAGTCATCAGTTTTCAGAAGG
Band lengths:
303-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]