MmuEX6074968 @ mm10
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3114972-3148580:+
Coord C1 exon
chr17:3114972-3115418
Coord A exon
chr17:3145075-3145158
Coord C2 exon
chr17:3148536-3148580
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTTTTCCTTCAGTTG
3' ss Score
10.38
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGATGCCGCAGCCGCCGCGGTCAGCGCTTCCTCCTGTGTCTTCGCTGCGCGCTGCAGGTTCCCGCGGCCTAGGCGGCAGGGAGGTGACACAGGAGCCCGTGGGAGGAAGAGGAAGGAGGAGAAGGGGGTGGAGAGTGGAGGGGGCCGAAGCTTGAGTGTGGAGGCCGCTTCCGAGCGAGGCGGAGAAGCAGAGAAGGCGCCGCGCCAGCCCCTCCCCCGCCGCCGACCCGCCCCGGCGGCCTCCGTCCTGCTCACTGCGCCCGCCCCGCGGCCATGCTGGGGCCTCGCCGGCGCTGAGGAGCGTCGCCTGCTCGCAGTGCTCCGCGGCCTCCTGGGCCCGTCGCCCGCCTTTCCGCACGCATCGCACCCGGCCGCCGCCTCTTCCTCCGTCGGGCCCCGGGCCTCTGCGCAGACAACATGGAGGCCGTGAAGACCTTCAACAGCGAG
Seq A exon
TTGTATTCACTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAAATTACAAAGGCAGCCATCAAAGCTATTAAG
Seq C2 exon
TTTTATAAACATGTGGTACAAAGTGTTGAGAAATTCATTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'0-8,'0-4,11-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCGTCGCCTGCTC
R:
TCTCAACACTTTGTACCACATGT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types