MmuEX6074968 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3115275-3148580:+
Coord C1 exon
chr17:3115275-3115418
Coord A exon
chr17:3145075-3145158
Coord C2 exon
chr17:3148536-3148580
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTTTTCCTTCAGTTG
3' ss Score
10.38
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCGCCTGCTCGCAGTGCTCCGCGGCCTCCTGGGCCCGTCGCCCGCCTTTCCGCACGCATCGCACCCGGCCGCCGCCTCTTCCTCCGTCGGGCCCCGGGCCTCTGCGCAGACAACATGGAGGCCGTGAAGACCTTCAACAGCGAG
Seq A exon
TTGTATTCACTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAAATTACAAAGGCAGCCATCAAAGCTATTAAG
Seq C2 exon
TTTTATAAACATGTGGTACAAAGTGTTGAGAAATTCATTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'1-7,'1-4,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079616=MBA1=PU(33.3=75.0)
C2:
PF079616=MBA1=FE(22.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCGCACGCATCGC
R:
TCTGAATGAATTTCTCAACACTTTGT
Band lengths:
143-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: