BtaEX0031452 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92788654-92834995:+
Coord C1 exon
chr9:92788654-92788754
Coord A exon
chr9:92829887-92829970
Coord C2 exon
chr9:92834951-92834995
Length
84 bp
Sequences
Splice sites
3' ss Seq
AATTTGTTCTTTTTCATCAGTTG
3' ss Score
6.71
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCGCTCTCCCCACCCAGTGCAGTGGCCGCCGCCTCTTCCGCCGCCGGGCTCCGGGCCTCCGCACCGACAACATGGAGGCTGTGAAAACCTTCAATAGCGAG
Seq A exon
TTGTATTCCCTGAATGACTACAAGCCACCCATTTCTAAAGCGAAAATGACCCAAATTACTAAGGCAGCCATCAAAGCTATAAAG
Seq C2 exon
TTCTATAAACATGTGGTACAGAGTGTTGAGAAATTCATTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'0-3,'0-1,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTCCCCACCCAGTG
R:
TCTGAATGAATTTCTCAACACTCTGT
Band lengths:
143-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development