MmuEX6075546 @ mm10
Exon Skipping
Gene
ENSMUSG00000049620 | Prss33
Description
protease, serine 33 [Source:MGI Symbol;Acc:MGI:2661234]
Coordinates
chr17:23834597-23835299:-
Coord C1 exon
chr17:23835276-23835299
Coord A exon
chr17:23834998-23835160
Coord C2 exon
chr17:23834597-23834868
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTTGTCCTGTCACAGCTT
3' ss Score
8.06
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GAACCAGGATGCAGGAGTGTGCAG
Seq A exon
CTTGTGGGCAGCCCCGCATGTCCAGCCGGATCGTTGGGGGCCGGGATGCTCAGGATGGAGAGTGGCCGTGGCAAACAAGCATTCAGCACCGTGGAGCCCATGTGTGCGGAGGGTCACTCATTGCACCCCAGTGGGTGTTGACGGCAGGTCACTGTTTCCCTAG
Seq C2 exon
ACGGGTATGGCCGTCAGAGTACAGTGTGCTCCTGGGAGCACTGAGTCTGGACGTCAGGTCATCCCACGAGCTCTTGGTTCCTGTGCTGCGGGTGCTGCTGCCTCCTGACTACTCTGAGGACGAGGCCCGTGGTGACCTGGCACTGCTGCAGCTGCGTCACCCAGTGTCCCTGAGCACCCGCATCCAGCCTGTCTGCCTGCCTGCACCAGGGTCCCATCCACCACCAGGGTCTCCATGCTGGGTCACTGGCTGGGGTAGCCTCAGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049620-'3-7,'3-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGGATGCAGGAGTGTG
R:
GGTGGATGGGACCCTGGTG
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types