MmuEX6075546 @ mm9
Exon Skipping
Gene
ENSMUSG00000049620 | Prss33
Description
protease, serine, 33 [Source:MGI Symbol;Acc:MGI:2661234]
Coordinates
chr17:23971564-23972266:-
Coord C1 exon
chr17:23972243-23972266
Coord A exon
chr17:23971965-23972127
Coord C2 exon
chr17:23971564-23971835
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTTGTCCTGTCACAGCTT
3' ss Score
8.06
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GAACCAGGATGCAGGAGTGTGCAG
Seq A exon
CTTGTGGGCAGCCCCGCATGTCCAGCCGGATCGTTGGGGGCCGGGATGCTCAGGATGGAGAGTGGCCGTGGCAAACAAGCATTCAGCACCGTGGAGCCCATGTGTGCGGAGGGTCACTCATTGCACCCCAGTGGGTGTTGACGGCAGGTCACTGTTTCCCTAG
Seq C2 exon
ACGGGTATGGCCGTCAGAGTACAGTGTGCTCCTGGGAGCACTGAGTCTGGACGTCAGGTCATCCCACGAGCTCTTGGTTCCTGTGCTGCGGGTGCTGCTGCCTCCTGACTACTCTGAGGACGAGGCCCGTGGTGACCTGGCACTGCTGCAGCTGCGTCACCCAGTGTCCCTGAGCACCCGCATCCAGCCTGTCTGCCTGCCTGCACCAGGGTCCCATCCACCACCAGGGTCTCCATGCTGGGTCACTGGCTGGGGTAGCCTCAGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049620-'3-8,'3-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.050 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGGATGCAGGAGTGTG
R:
GGTGGATGGGACCCTGGTG
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: