HsaEX6041913 @ hg19
Exon Skipping
Gene
ENSG00000103355 | PRSS33
Description
protease, serine, 33 [Source:HGNC Symbol;Acc:30405]
Coordinates
chr16:2835376-2836122:-
Coord C1 exon
chr16:2836090-2836122
Coord A exon
chr16:2835800-2835962
Coord C2 exon
chr16:2835376-2835647
Length
163 bp
Sequences
Splice sites
3' ss Seq
CGCCCCTGGTCCTTTTCTAGCCT
3' ss Score
7.93
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GAGCTGCTGGGACTCAGGGAAGGAAGTCTGCAG
Seq A exon
CCTGCGGGCAGCCCCGCATGTCCAGTCGGATCGTTGGGGGCCGGGATGGCCGGGACGGAGAGTGGCCGTGGCAGGCGAGCATCCAGCATCGTGGGGCACACGTGTGCGGGGGGTCGCTCATCGCCCCCCAGTGGGTGCTGACAGCGGCGCACTGCTTCCCCAG
Seq C2 exon
GAGGGCACTGCCAGCTGAGTACCGCGTGCGCCTGGGGGCGCTGCGTCTGGGCTCCACCTCGCCCCGCACGCTCTCGGTGCCCGTGCGACGGGTGCTGCTGCCCCCGGACTACTCCGAGGACGGGGCCCGCGGCGACCTGGCACTGCTGCAGCTGCGTCGCCCGGTGCCCCTGAGCGCTCGCGTCCAACCCGTCTGCCTGCCCGTGCCCGGCGCCCGCCCGCCGCCCGGCACACCATGCCGGGTCACCGGCTGGGGCAGCCTCCGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103355-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.209 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGAAGGAAGTCTGCAG
R:
GTGACCCGGCATGGTGTG
Band lengths:
266-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)