MmuEX6076019 @ mm10
Exon Skipping
Gene
ENSMUSG00000041199 | Rpusd1
Description
RNA pseudouridylate synthase domain containing 1 [Source:MGI Symbol;Acc:MGI:1919186]
Coordinates
chr17:25728203-25728928:+
Coord C1 exon
chr17:25728203-25728391
Coord A exon
chr17:25728523-25728646
Coord C2 exon
chr17:25728826-25728928
Length
124 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCTGCCCGTTCCCAGGTT
3' ss Score
9.86
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCCCACCATGGAGCCTGGCAGCATGGAAAATCTGTCCATCGTGTACCAGAGCAGCGACTTCCTGGTGGTGAACAAGCACTGGGACCTGCGCATTGATAGCAAGACCTGGCGGGAGACCCTGACCCTACAGAAGCAGCTCCGACACCACTTCCCAGAGCTGGCTGACCCTGACACCTGCTATGGGTTCAG
Seq A exon
GTTCTGCCACCAGCTGGACTTCTCCACCAGTGGGGCACTGTGCGTAGCCCTGAATAAGGCAGCTGCGGGCAGTGCTTATAAATGCTTCAAGGAACGGCGAGTCACCAAAGCCTACCTGGCACTG
Seq C2 exon
GTCCGAGGCCATGTCCAGGAAAGCCAAGTGACGATCAACTATGCCATTGGCAGGAATAGCACGGAGGGGCGGACGCATACCATGTGCATCGAGGGCACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041199-'1-13,'1-6,3-13=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=PU(26.5=72.1)
A:
PF0084917=PseudoU_synth_2=FE(24.7=100)
C2:
PF0084917=PseudoU_synth_2=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACCAGAGCAGCGACTTC
R:
CTCGATGCACATGGTATGCGT
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types