MmuEX6076983 @ mm9
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34200578-34201236:+
Coord C1 exon
chr17:34200578-34200613
Coord A exon
chr17:34200809-34200862
Coord C2 exon
chr17:34200969-34201236
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTATTAATTCCTTTGTTAGGGC
3' ss Score
5.84
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGACCCTCTGGCCCCAAAGGAGCCAAAGGAGCCACA
Seq A exon
GGCCCAGCTGGACCCAAGGGAGAGAAGGGTGTCCAGGGCCCTCCAGGACACCCG
Seq C2 exon
GGCCCCCCGGGAGAGGTGATCCAGCCACTGCCCATCCAGATGCCCAAGAAGACCCGCCGTTCCGTGGACGGAAGCAAACTGATACAGGATGAGGAGGCTGTGCCCACTGGCGGTGCTCCGGGCAGTCCTGCGGGGCTGGAGGAGATCTTTGGCTCACTGGACTCTCTGCGGGAGGAGATCGAGCAGATGAGGAGGCCGGCGGGGACCCAGGACAGCCCTGCTCGCACCTGCCAGGACTTGAAGCTGTGCCACCCGGAGCTTCCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330-'66-68,'66-67,67-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.933
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(13.3=8.9),PF0141013=COLFI=PU(41.5=30.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTGGCCCCAAAGGAG
R:
GCACAGCCTCCTCATCCTGTA
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: