BtaEX6096851 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7293028-7293658:-
Coord C1 exon
chr23:7293623-7293658
Coord A exon
chr23:7293390-7293443
Coord C2 exon
chr23:7293028-7293295
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCATTGCCTCCTTTGGCAGGGC
3' ss Score
7.68
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGACCTGCTGGCCCCAAAGGAGCCAAAGGAGCCACA
Seq A exon
GGCCCGGCCGGACCTAAGGGAGAGAAGGGCGTCCAGGGCCCTCCGGGACACCCG
Seq C2 exon
GGACCCCCGGGAGAGGTGATCCAGCCCCTGCCCATCCAGATGCCCAAGAAGACGCGGCGCTCAGTGGACGGAAGCCGCCTGATGCAGGAAGATGAAGCTGTGCCAACTGGGGGTGCCCCGGGTAGTCCTGGGGGCCTGGAGGAGATCTTTGGCTCCCTGGACTCCCTGCGGGAGGAGATCGAGCAAATGAGGCGGCCCATGGGGACCCAGGACAGCCCTGCTCGCACCTGCCAGGACCTGAAGCTCTGCCACCCAGAGCTGCCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'64-64,'64-63,65-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.933
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(13.3=8.9),PF0141013=COLFI=PU(41.5=30.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAAGGAGCCAAAGGAG
R:
GTTGGCACAGCTTCATCTTCCT
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]