DreEX6071894 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7266391-7267265:-
Coord C1 exon
chr19:7267230-7267265
Coord A exon
chr19:7267076-7267129
Coord C2 exon
chr19:7266391-7266670
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTTATCTCTGTGGTACAGGGT
3' ss Score
6.44
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGCCCGAGGGGTGTCAAAGGAGCTAAAGGTGCCAGT
Seq A exon
GGTGGGGCTGGTCCTAAAGGAGAAAAGGGTGTACAAGGACCACCAGGACCACCT
Seq C2 exon
GGTCCCCCTGGTGATGTCATCCAGCCGCTGCCCATTCAGATCCCCAAGAAGTCCAAGCGCTCCATCGACGCCAGTAAGATTCTGTCTGAGGCTGACGCTGAGGCTGCCGACACCACTGGCTCTGAGTTCCTGACTGGTAATGAAGGAATGGAGGAGATCTTCGGCTCACTTAATTCCCTGCGCCAGGAGATCGAGAGCATGCGCTTCCCATTGGGCACAAAGGAGAGCCCCGGCCGCACCTGCCAGGATCTCCATCTCAGCCAACCAGATCTGAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422-'68-67,'68-66,69-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.809
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(18.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(13.3=8.5),PF0141013=COLFI=PU(12.7=28.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGGTGTCAAAGGAGCTA
R:
CAGCGTCAGCCTCAGACAGAA
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]