RnoEX6061486 @ rn6
Exon Skipping
Gene
ENSRNOG00000000463 | Col11a2
Description
collagen type XI alpha 2 chain [Source:RGD Symbol;Acc:2373]
Coordinates
chr20:3855759-3856408:+
Coord C1 exon
chr20:3855759-3855794
Coord A exon
chr20:3855982-3856035
Coord C2 exon
chr20:3856141-3856408
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTATTAATTCCTTTGTTAGGGC
3' ss Score
6.28
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGACCGTCCGGCCCCAAAGGAGCTAAAGGAGCCACA
Seq A exon
GGCCCCGCTGGACCCAAAGGAGAGAAAGGTGTTCAGGGCCCTCCAGGACACCCG
Seq C2 exon
GGTCCCCCGGGCGAGGTGATCCAGCCACTGCCCATCCAGATGCCCAAGAAGACCCGGCGCTCTGTGGACGGAAGCAAACTGATGCAGGATGAGGAGGCCACACCCACTGGCGGTGCCCCGGGCAGTCCTGCAGGACTGGAGGAGATCTTCGGTTCACTGGACTCTCTGCGGGAGGAGATCGAACAGATGAGGAGGCCGACAGGGACCCAGGACAGCCCTGCCCGCACCTGCCAGGACTTGAAGCTGTGCCACCCAGAGCTTCCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000463-'72-65,'72-64,73-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.933
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.7=25.0),PF0139113=Collagen=FE(18.0=100)
A:
PF0139113=Collagen=FE(27.9=100)
C2:
PF0139113=Collagen=PD(13.1=8.9),PF0141013=COLFI=PU(41.5=30.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAAAGGAGCTAAAGGAG
R:
TGGGTGTGGCCTCCTCATC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]