MmuEX6077002 @ mm9
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34195223-34195877:+
Coord C1 exon
chr17:34195223-34195312
Coord A exon
chr17:34195501-34195554
Coord C2 exon
chr17:34195770-34195877
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCCTAAATCTGGTTCATAGGGT
3' ss Score
6.37
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGTGACCCTGGTCCTCCTGGGGCCCCAGGGAAGGATGGTCCTGCTGGTCTGAGAGGCTTCCCAGGAGAGCGAGGCCTTCCAGGCACTGCT
Seq A exon
GGTGGACCCGGCTTGAAAGGAAATGAAGGTCCAGCTGGCCCTCCTGGCCCTGCA
Seq C2 exon
GGCTCTCCTGGCGAGCGAGGTGCAGCAGGATCAGGGGGCCCCATTGGTCCCCCGGGACGTCCAGGCCCACAAGGTCCCCCTGGAGCAGCAGGAGAGAAAGGCGTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330-'43-45,'43-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(46.0=96.7),PF0139113=Collagen=PU(10.3=26.7)
A:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=FE(24.6=100),PF0139113=Collagen=PU(12.8=61.1)
C2:
PF0139113=Collagen=PD(22.2=38.9),PF0139113=Collagen=FE(51.5=100),PF0139113=Collagen=PU(42.6=80.6),PF0139113=Collagen=PU(5.7=13.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGGCTTCCCAGGAGAG
R:
GTACGCCTTTCTCTCCTGCTG
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: