RnoEX6061502 @ rn6
Exon Skipping
Gene
ENSRNOG00000000463 | Col11a2
Description
collagen type XI alpha 2 chain [Source:RGD Symbol;Acc:2373]
Coordinates
chr20:3850642-3851280:+
Coord C1 exon
chr20:3850642-3850731
Coord A exon
chr20:3850905-3850958
Coord C2 exon
chr20:3851173-3851280
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCCTAAATCTGGTTCCTAGGGC
3' ss Score
7.17
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGTGACCCCGGGCCCCCCGGGGCCCCAGGGAAGGATGGCCCCGCTGGTCTGAGAGGCTTCCCAGGAGAGCGAGGCCTCCCGGGCACTGCT
Seq A exon
GGCGGACCTGGCTTGAAGGGAAATGAAGGCCCAGCTGGCCCTCCTGGCCCTGCA
Seq C2 exon
GGCTCTCCTGGCGAGCGAGGTGCAGCAGGATCAGGGGGCCCCATTGGTCCCCCTGGACGTCCAGGCCCACAGGGTCCCCCTGGGGCAGCAGGAGAGAAAGGCGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000463-'50-41,'50-40,51-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.9=36.7),PF0139113=Collagen=PU(3.3=10.0)
A:
PF0139113=Collagen=FE(18.9=100)
C2:
PF0139113=Collagen=FE(38.9=100),PF0139113=Collagen=PU(5.8=13.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGGCTTCCCAGGAGAG
R:
CACGCCTTTCTCTCCTGCTG
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]