DreEX0022853 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7269910-7271531:-
Coord C1 exon
chr19:7271334-7271531
Coord A exon
chr19:7271109-7271162
Coord C2 exon
chr19:7269910-7269963
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTGACTCTGTTTTCTTAGGGT
3' ss Score
8.5
5' ss Seq
GCGGTATGA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGTCCCTCTGGTGAGACTGGTCAGATGGGTGAGCGTGGCCACCCTGGACCTCCAGGACCACCTGGTGAGCAAGGCCTTTCTGGCTCCTCTGGTAAAGAAGGAACCAAAGGAGATCCCGGTCCTCCTGGTGGCCCCGGTAAAGATGGACCCCCTGGACTTAGAGGATTCCCAGGAGAGAGAGGACTACCAGGAACTCCA
Seq A exon
GGTTCTGGAGGACTGAAAGGAAATGAAGGCCCTGCTGGACCACCTGGTCCTGCG
Seq C2 exon
GGTTTGCCAGGCCCAGGTGGAGAAAAGGGAGAGACAGGAGATGTTGGACCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX2-12/23=11-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.0=15.2),PF0139113=Collagen=FE(66.3=100),PF0139113=Collagen=PU(48.6=53.0)
A:
PF0139113=Collagen=PD(1.0=5.6),PF0139113=Collagen=FE(23.6=100)
C2:
PF0139113=Collagen=PD(20.8=88.9),PF0139113=Collagen=PU(19.7=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCAAAGGAGATCCCGG
R:
TCTCCCTTTTCTCCACCTGGG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]