BtaEX6096830 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7298964-7299599:-
Coord C1 exon
chr23:7299510-7299599
Coord A exon
chr23:7299280-7299333
Coord C2 exon
chr23:7298964-7299071
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCCAATCTCTGGCTCACAGGGC
3' ss Score
6.83
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGCGATCCCGGACCCCCTGGGGCCCCGGGGAAGGATGGTCCCGCTGGTCTGAGGGGCTTTCCGGGAGAGAGAGGCCTCCCTGGCACTGCT
Seq A exon
GGCGGGCCTGGTCTGAAGGGGAATGAAGGCCCGGCTGGTCCCCCAGGCCCTGCA
Seq C2 exon
GGATCCCCTGGTGAGCGAGGTTCGGCAGGATCTGGGGGACCCATTGGCCCCCCAGGGCGCCCGGGACCGCAGGGTCCGCCTGGAGCAGCGGGAGAGAAAGGGGTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'43-43,'43-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(32.2=100),PF0139113=Collagen=FE(36.2=100)
A:
PF0139113=Collagen=PD(2.2=11.1),PF0139113=Collagen=FE(21.2=100)
C2:
PF0139113=Collagen=PD(16.2=36.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCGGGAGAGAGAGGCC
R:
CTTTCTCTCCCGCTGCTCCAG
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]