MmuEX6077011 @ mm9
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34192997-34193534:+
Coord C1 exon
chr17:34192997-34193050
Coord A exon
chr17:34193338-34193391
Coord C2 exon
chr17:34193490-34193534
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCCAATCTGTCCAGGGA
3' ss Score
7.84
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGCAAGCTAGGTGTTCCTGGTCTGCCTGGCTATCCTGGACGCCAGGGCCCCAAG
Seq A exon
GGATCTCTGGGTTTCCCTGGTTTTCCTGGAGCCAGTGGAGAGAAGGGAGCTCGG
Seq C2 exon
GGCCTGTCTGGGAAATCAGGACCTCGGGGAGAACGGGGCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330-'33-36,'33-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(19.4=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCTAGGTGTTCCTGGTC
R:
TCTCCCCGAGGTCCTGATTTC
Band lengths:
85-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: