GgaEX1016849 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8210556-8215474:+
Coord C1 exon
chr17:8210556-8210609
Coord A exon
chr17:8211947-8212000
Coord C2 exon
chr17:8215430-8215474
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTCTCTCCCCCAAAGGGC
3' ss Score
10.58
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GGAAAACTTGGCGTGCCAGGGCTGCCCGGCTACCCGGGCAGGCAGGGCCCAAAG
Seq A exon
GGCTCCATTGGCTTCCCAGGATTTCCAGGCGCCAACGGCGAGAAGGGCACACGG
Seq C2 exon
GGGACACCTGGCAAACCAGGTCCAAGGGGGCAACGCGGTCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'39-40,'39-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.7=100),PF0139113=Collagen=PU(11.1=44.4)
A:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(16.5=77.8)
C2:
PF0139113=Collagen=PD(15.7=86.7),PF0139113=Collagen=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACTTGGCGTGCCA
R:
CCCCCTTGGACCTGGTTTG
Band lengths:
84-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]