MmuEX6099933 @ mm9
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:27845558-27851270:+
Coord C1 exon
chr2:27845558-27845611
Coord A exon
chr2:27847514-27847567
Coord C2 exon
chr2:27851226-27851270
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTAACTCTCTTGCAGGGT
3' ss Score
10.71
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGAAAGCTTGGCGTGCCCGGATTACCGGGGTACCCAGGAAGACAAGGGCCAAAG
Seq A exon
GGTTCCATTGGATTCCCTGGCTTCCCGGGCGCCAACGGAGAGAAGGGTGGCAGG
Seq C2 exon
GGGACACCTGGAAAGCCAGGACCACGGGGACAGAGAGGCCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(17.9=77.8)
A:
PF0139113=Collagen=FE(21.8=100)
C2:
PF0139113=Collagen=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCGTGCCCGGATTAC
R:
GTTGGGCCTCTCTGTCCCC
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: