HsaEX0016267 @ hg19
Exon Skipping
Gene
ENSG00000204248 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:2187]
Coordinates
chr6:33137160-33142357:-
Coord C1 exon
chr6:33142304-33142357
Coord A exon
chr6:33141942-33141995
Coord C2 exon
chr6:33137160-33137267
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCCGTTCTCACCAGGGG
3' ss Score
10.73
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGCAAGCTGGGTGTTCCTGGTCTGCCTGGCTATCCTGGACGTCAGGGACCCAAG
Seq A exon
GGGTCCCTAGGATTTCCTGGCTTTCCTGGTGCCAGTGGAGAGAAGGGAGCCCGG
Seq C2 exon
GGTCCACGCGGGGAACGTGGAGAGAAAGGAGAGTCGGGGCAGCCAGGAGAGCCAGGGCCACCAGGGCCTAAAGGCCCCACAGGCGATGATGGCCCCAAAGGGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248_MULTIEX1-7/37=6-26
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(13.3=77.8)
A:
PF0139113=Collagen=FE(16.2=100)
C2:
PF0139113=Collagen=PD(5.2=13.9),PF0139113=Collagen=FE(42.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCTGCCTGGCTATCCT
R:
CTTTGGGGCCATCATCGCC
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)