MmuEX6077011 @ mm10
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34056052-34056589:+
Coord C1 exon
chr17:34056052-34056105
Coord A exon
chr17:34056393-34056446
Coord C2 exon
chr17:34056545-34056589
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCCAATCTGTCCAGGGA
3' ss Score
7.84
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGCAAGCTAGGTGTTCCTGGTCTGCCTGGCTATCCTGGACGCCAGGGCCCCAAG
Seq A exon
GGATCTCTGGGTTTCCCTGGTTTTCCTGGAGCCAGTGGAGAGAAGGGAGCTCGG
Seq C2 exon
GGCCTGTCTGGGAAATCAGGACCTCGGGGAGAACGGGGCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330-'44-42,'44-41,46-42
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(19.4=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCTAGGTGTTCCTGGTC
R:
TCTCCCCGAGGTCCTGATTTC
Band lengths:
85-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types