MmuEX6077617 @ mm10
Exon Skipping
Gene
ENSMUSG00000073402 | Gm8909
Description
predicted gene 8909 [Source:MGI Symbol;Acc:MGI:3704134]
Coordinates
chr17:36164443-36165472:-
Coord C1 exon
chr17:36165356-36165472
Coord A exon
chr17:36164977-36165022
Coord C2 exon
chr17:36164443-36164676
Length
46 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCTTCTACTGCAGGCA
3' ss Score
11.15
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGCCTCGTCCATCCAGGGACTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGTTGTGATCATCATTGGAGCTATGGTGCCTTTTGTGTTGAAGAGCAGGAGAAAAATAG
Seq A exon
GCAGCAACAGTGTCCAGGGCTCTGCCTTGTTTCTGGAGGCCTTCAG
Seq C2 exon
CCATCCTTCCTGATCCAGCAGGCACTAGGGGACATCTGCATCCTGTCAGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACATCCACACTGAACATAAGAATCTGAATGTGAACTCAATTGAATCTGAATTTGAAATAGAAGAAAGTGGCTGGTTTCTGTCCTTGAGAAAATAATCTGTCTGAAATTAAATCAGAGCTTTAGATTAAGGGCCTTGGCAGAGGAGACTTCAGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073402-'9-14,'9-13,10-14=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PU(3.8=2.5)
A:
PF066236=MHC_I_C=PD(50.0=81.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTCTGGTTGTCCTTGG
R:
CATGGAGCTGACAGGATGCAG
Band lengths:
136-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types