MmuEX6077617 @ mm9
Exon Skipping
Gene
ENSMUSG00000073402 | Gm8909
Description
predicted gene 8909 [Source:MGI Symbol;Acc:MGI:3704134]
Coordinates
chr17:36301389-36302122:-
Coord C1 exon
chr17:36302090-36302122
Coord A exon
chr17:36301922-36301967
Coord C2 exon
chr17:36301389-36301621
Length
46 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCTTCTACTGCAGGCA
3' ss Score
11.15
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGAAAAGAAGAGAACTATGCTCTGGCTGGAG
Seq A exon
GCAGCAACAGTGTCCAGGGCTCTGCCTTGTTTCTGGAGGCCTTCAG
Seq C2 exon
CCATCCTTCCTGATCCAGCAGGCACTAGGGGACATCTGCATCCTGTCAGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACATCCACACTGAACATAAGAATCTGAATGTGAACTCAATTGAATCTGAATTTGAAATAGAAGAAAGTGGCTGGTTTCTGTCCTTGAGAAAATAATCTGTCTGAAATTAAATCAGAGCTTTAGATTAAGGGCCTTGGCAGAGGAGACTTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073402-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063056=DUF1049=PD(13.5=41.7),PF066236=MHC_I_C=FE(42.3=100)
A:
PF066236=MHC_I_C=PD(50.0=81.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAACTATGCTCTGGCTGGA
R:
TCAATTGAGTTCACATTCAGATTCT
Band lengths:
144-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: