MmuEX6078780 @ mm9
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57443257-57444800:+
Coord C1 exon
chr17:57443257-57443366
Coord A exon
chr17:57444247-57444348
Coord C2 exon
chr17:57444703-57444800
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTCAAATTCTCTCCCCAGCTC
3' ss Score
8.87
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TGGAGCCATATGTTCCTTCTGATTGAGGATCAAGGCGCCCAGGGCTATGAGCTGTTCTTCAAGACTCGGGAGCTGAAGAAGAAGTGGATGGAACAGTTCGAAATGGCCAT
Seq A exon
CTCCAACATTTACCCAGAGAATGCTACAGCCAATGGGCATGATTTTCAGATGTTCTCCTTTGAGGAGACCACTTCCTGCAAGGCCTGCCAGATGTTACTCAG
Seq C2 exon
AGGCACATTCTACCAGGGATATCGCTGTTACAGGTGCCGGGCACCTGCACACAAGGAGTGTCTGGGGAGAGTGCCTCCCTGTGGTCGCCATGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.3=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(39.6=60.0),PF144461=Prok-RING_1=PU(26.4=40.0)
C2:
PF0013017=C1_1=PD(58.5=91.2),PF144461=Prok-RING_1=FE(62.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCCATATGTTCCTTCTGA
R:
CATGGCGACCACAGGGAGG
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: