MmuEX6078780 @ mm10
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57303834-57305377:+
Coord C1 exon
chr17:57303834-57303943
Coord A exon
chr17:57304824-57304925
Coord C2 exon
chr17:57305280-57305377
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTCAAATTCTCTCCCCAGCTC
3' ss Score
8.87
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TGGAGCCATATGTTCCTTCTGATTGAGGATCAAGGCGCCCAGGGCTATGAGCTGTTCTTCAAGACTCGGGAGCTGAAGAAGAAGTGGATGGAACAGTTCGAAATGGCCAT
Seq A exon
CTCCAACATTTACCCAGAGAATGCTACAGCCAATGGGCATGATTTTCAGATGTTCTCCTTTGAGGAGACCACTTCCTGCAAGGCCTGCCAGATGTTACTCAG
Seq C2 exon
AGGCACATTCTACCAGGGATATCGCTGTTACAGGTGCCGGGCACCTGCACACAAGGAGTGTCTGGGGAGAGTGCCTCCCTGTGGTCGCCATGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'18-34,'18-27,23-34=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.3=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(39.6=60.0)
C2:
PF0013017=C1_1=PD(58.5=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCCATATGTTCCTTCTGA
R:
CATGGCGACCACAGGGAGG
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types