GgaEX1062975 @ galGal4
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7054222-7059741:-
Coord C1 exon
chr17:7059656-7059741
Coord A exon
chr17:7057822-7057923
Coord C2 exon
chr17:7054222-7054338
Length
102 bp
Sequences
Splice sites
3' ss Seq
AACCCCACTCCTTCCTGCAGGTC
3' ss Score
9.67
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAAGTGAAGCTGGAGGAGTTTGGGAGGCCGAAGATAGACGGTGAGCTGAAGGTCCGCTCCATTGTGAACCACACCAAGCAGGACAG
Seq A exon
GTCCAACATAAAGCCAGAGAAAGCCAATGCAAACCACCACAGCTTCCAGATGTACACGTTTGAAAAGACCACCAACTGCAAAGCATGCAAGATGTTCCTAAG
Seq C2 exon
GTTTGCAGGGAACATGGAGCGGCAGCAGACGGACAACCTGCTGAAGGCCCACGTCAGCGGCACCTACCTGATCCGCGAGCGGCCGGCCGAGGCTGAGCGCTTTGCCATCAGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699_MULTIEX1-4/10=C1-C2
Average complexity
C3
Mappability confidence:
94%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(18.6=65.5)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(40.4=60.0)
C2:
PF0001719=SH2=PU(52.0=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCTGGAGGAGTTTGGGA
R:
GCTGATGGCAAAGCGCTCAG
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]