DreEX6083963 @ danRer10
Exon Skipping
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:17997042-18004515:-
Coord C1 exon
chr21:18004406-18004515
Coord A exon
chr21:18004217-18004318
Coord C2 exon
chr21:17997042-17997130
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGATTATTAATCCACACAGGTC
3' ss Score
5.69
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TGGTCGTACGGCTTTTACCTGATCCATCTGCAGGGGAAACAGGGATTCCAGTTCTTCTGCAAGACAGAAGACACCAAACGCAAATGGATGGAGCAGTTTGAGATGGCCAT
Seq A exon
GTCAAACATTAAACCCGAACGAGCCACTGCCAACCAGCACAACTTCCAAATGCACACGTTTGAGAAGAACACCAACTGCAGAGCCTGTAAAATGCTGCTGAG
Seq C2 exon
GGGTATTTTCTACCAGGGATACTACTGTTCTCTCTGTGGGACAGGCGCACATAAGGAGTGTCTGGAGATCATTACCATCTGCAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(33.6=100)
A:
PF0016924=PH=PD(0.9=2.9),PF0013017=C1_1=PU(40.4=60.0)
C2:
PF0013017=C1_1=FE(57.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCGTACGGCTTTTACCTG
R:
TTGCAGATGGTAATGATCTCCAGAC
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]