BtaEX6047388 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104666204-104668253:-
Coord C1 exon
chr11:104668144-104668253
Coord A exon
chr11:104666662-104666763
Coord C2 exon
chr11:104666204-104666292
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCCGCTCTCCCTCCCTCCAGGTC
3' ss Score
14.78
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
TGGTCCTACGGCTTCTATCTCATTCACCTACAAGGCAAGCAAGGCTTCCAGTTTTTCTGCAAGACAGAGGACATGAAGAGGAAGTGGATGGAGCAGTTTGAGATGGCCAT
Seq A exon
GTCAAACATCAAGCCCGACAAGGCCAACGCCAACCACCACAGCTTCCAGATGTACACGTTCGACAAGACCACCAACTGCAAAGCCTGCCGCATGTTCCTCAG
Seq C2 exon
GGGTACTTTCTACCAGGGTTACCTCTGCACCAAGTGTGGCGTCGGGGCGCACAAGGAGTGTCTGGAAGTGACCCCTCCCTGCAAGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.3=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(40.4=60.0)
C2:
PF0013017=C1_1=FE(57.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTACGGCTTCTATCTCA
R:
GATCTTGCAGGGAGGGGTCA
Band lengths:
198-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]