GgaEX1062975 @ galGal3
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
NA
Coordinates
chr17:7737172-7737817:-
Coord C1 exon
chr17:7737708-7737817
Coord A exon
chr17:7737348-7737449
Coord C2 exon
chr17:7737172-7737260
Length
102 bp
Sequences
Splice sites
3' ss Seq
AACCCCACTCCTTCCTGCAGGTC
3' ss Score
9.67
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGGTCGTACGGCTTCTACCTGATCCACCTGCAGGGAAAGCAGGGCTTCCAGTTCTTCTGCAAGACAGAGGAGATGAAGAGGAAGTGGATGGAGCAGTTTGAAATGGCAAT
Seq A exon
GTCCAACATAAAGCCAGAGAAAGCCAATGCAAACCACCACAGCTTCCAGATGTACACGTTTGAAAAGACCACCAACTGCAAAGCATGCAAGATGTTCCTAAG
Seq C2 exon
AGGAACGTTCTACCAGGGCTATCTCTGCCCAAAATGTGGAGCTGGTGCTCACAAAGAGTGCCTGGAAATCATTCCTCCCTGCAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-'19-20,'19-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.3=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(40.4=60.0)
C2:
PF0013017=C1_1=FE(57.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGTACGGCTTCTACCTGA
R:
CCATCTTGCAGGGAGGAATGA
Band lengths:
198-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]