RnoEX6016097 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5829004-5830929:-
Coord C1 exon
chr3:5830820-5830929
Coord A exon
chr3:5829316-5829417
Coord C2 exon
chr3:5829004-5829092
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCTCTCCTTCCACAGGTC
3' ss Score
14.06
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
TGGTCCTATGGCTTCTACCTGATTCACCTCCAAGGGAAGCAAGGCTTTCAGTTCTTCTGCAAGACGGAAGACATGAAACGGAAGTGGATGGAGCAGTTCGAGATGGCCAT
Seq A exon
GTCAAACATCAAGCCAGACAAGGCCAATGCCAACCATCATAGTTTCCAGATGTACACGTTTGACAAGACCACCAACTGCAAAGCCTGCAAGATGTTCCTCAG
Seq C2 exon
GGGTACCTTCTACCAGGGATACCTGTGTACCAGATGTGGTGTCGGGGCACACAAGGAGTGCCTGGAGGTGATACCCCCCTGCAAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-'24-26,'24-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.007
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.3=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(40.4=60.0)
C2:
PF0013017=C1_1=FE(57.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTATGGCTTCTACCTGA
R:
GGGTATCACCTCCAGGCACTC
Band lengths:
186-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]