HsaEX0070260 @ hg19
Exon Skipping
Gene
ENSG00000160293 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12658]
Coordinates
chr9:136648625-136651007:-
Coord C1 exon
chr9:136650898-136651007
Coord A exon
chr9:136649439-136649540
Coord C2 exon
chr9:136648625-136648713
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTCCCTCCTGCCAGGTC
3' ss Score
13.28
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
TGGTCCTACGGCTTCTACCTAATTCACCTTCAAGGAAAGCAGGGCTTCCAGTTTTTCTGCAAAACAGAAGATATGAAGAGGAAGTGGATGGAGCAGTTTGAGATGGCCAT
Seq A exon
GTCAAACATCAAGCCAGACAAAGCCAATGCCAACCACCACAGTTTCCAGATGTACACGTTTGACAAGACCACCAACTGCAAAGCCTGCAAAATGTTCCTCAG
Seq C2 exon
GGGCACCTTCTACCAGGGATACATGTGTACCAAGTGTGGCGTCGGGGCACACAAGGAGTGCCTGGAAGTGATACCTCCCTGCAAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(26.7=86.5)
A:
PF0016924=PH=PD(0.9=2.9),PF0013017=C1_1=PU(41.2=60.0)
C2:
PF0013017=C1_1=PD(56.9=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTACGGCTTCTACCTA
R:
TTGCAGGGAGGTATCACTTCCA
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)