MmuEX6099874 @ mm10
Exon Skipping
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27281901-27283418:-
Coord C1 exon
chr2:27283309-27283418
Coord A exon
chr2:27282289-27282390
Coord C2 exon
chr2:27281901-27281989
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCAGTTTTCTCCTCCACCAGGTC
3' ss Score
8.92
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGGTCCTATGGCTTCTACCTGATTCACCTCCAAGGAAAGCAAGGCTTTCAGTTCTTCTGCAAGACGGAAGACATGAAGCGGAAGTGGATGGAGCAGTTCGAGATGGCCAT
Seq A exon
GTCAAACATCAAGCCAGATAAGGCCAATGCCAACCATCATAGCTTCCAGATGTACACATTCGACAAGACTACCAACTGCAAAGCCTGCAAGATGTTTCTCAG
Seq C2 exon
GGGTACCTTCTACCAGGGATACCTGTGTACCAGATGTGGCGTCGGGGCACACAAGGAATGCCTGGAGGTGATCCCCCCCTGCAAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-'50-30,'50-29,51-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.3=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(40.4=60.0)
C2:
PF0013017=C1_1=FE(57.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTATGGCTTCTACCTGA
R:
GGGGATCACCTCCAGGCATTC
Band lengths:
186-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types