HsaEX0070260 @ hg38
Exon Skipping
Gene
ENSG00000160293 | VAV2
Description
vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr9:133783503-133785885:-
Coord C1 exon
chr9:133785776-133785885
Coord A exon
chr9:133784317-133784418
Coord C2 exon
chr9:133783503-133783591
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTCCCTCCTGCCAGGTC
3' ss Score
13.28
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
TGGTCCTACGGCTTCTACCTAATTCACCTTCAAGGAAAGCAGGGCTTCCAGTTTTTCTGCAAAACAGAAGATATGAAGAGGAAGTGGATGGAGCAGTTTGAGATGGCCAT
Seq A exon
GTCAAACATCAAGCCAGACAAAGCCAATGCCAACCACCACAGTTTCCAGATGTACACGTTTGACAAGACCACCAACTGCAAAGCCTGCAAAATGTTCCTCAG
Seq C2 exon
GGGCACCTTCTACCAGGGATACATGTGTACCAAGTGTGGCGTCGGGGCACACAAGGAGTGCCTGGAAGTGATACCTCCCTGCAAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(33.6=100)
A:
PF0016924=PH=PD(0.9=2.9),PF0013017=C1_1=PU(41.2=60.0)
C2:
PF0013017=C1_1=PD(56.9=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTACGGCTTCTACCTA
R:
TTGCAGGGAGGTATCACTTCCA
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development