DreEX6095620 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29610703-29617625:-
Coord C1 exon
chr24:29617516-29617625
Coord A exon
chr24:29612757-29612858
Coord C2 exon
chr24:29610703-29610903
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCACGTTCTCTTTCAACAGATC
3' ss Score
11.53
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGGTGCCATGGATTCTACCTCACACACAACCAGGGTCAAAACGGCTTTGAGTTCTTCTTCAAAACCAAGGAGCTAAAGAAGAAATGGCAGGAGCAGTTTGGCATGGCATT
Seq A exon
ATCGAACATCTGTCCAGAGAGCGGGAAATGTAATTTCCATGAGTTCCGCATGCACACCTTTGAGACAACCACATCCTGCAGCTCATGTGAAATGCTGCTGAG
Seq C2 exon
AGGGGTCTTCTATCAAGGTTACCGGTGCTCTAAATGTGGTGCTGGCGCCCATAAGGAGTGTCTCGGCAGGGTGGAAGTCTGTGTCAAAAGCAGTGCCGGTGAGCCTCGCATTCAACACAACAAGCTCTTCCTAGCAATTTCTGTTCATGCACATTATAAAGCGTCTGTTTACAGAGCCTCTGGCTCATGTTTCAGCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'21-26,'21-25,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.0=100)
A:
PF0016924=PH=PD(0.9=2.9),PF0013017=C1_1=PU(39.6=60.0)
C2:
PF0013017=C1_1=PD(58.5=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCCATGGATTCTACCTCA
R:
TGCTAGGAAGAGCTTGTTGTGT
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]