GgaEX1062992 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1009567-1063073:-
Coord C1 exon
chr8:1062964-1063073
Coord A exon
chr8:1047121-1047222
Coord C2 exon
chr8:1009567-1009632
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGTGGATTTTCTTATTTTAGGTC
3' ss Score
8.38
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGGTCTTATGGCTTCTACCTCATTCATATCCAAGGTCAAAATGGTTTAGAAGTTTATTGCAAAACTAAAGATTTGAAGAAAAAATGGCTTGAACAATTTCAGATGGCTCT
Seq A exon
GTCAAATATACGGCCAGATTATGCGGACACAAGCTTTCATGAGTTCAAAATGCATACTTTCAGTCGTGTGACGTCCTGCAAAGTCTGTCAAATGCTTCTTAG
Seq C2 exon
GGCAGAAATTTAACGACAGGAGAACTTGGCTTCTTCCCAAGTGATGCAGTGAAGCCCAGCCCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-14/26=13-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(10.3=100),PF0016924=PH=FE(35.3=100)
A:
PF0063014=Filamin=FE(9.7=100),PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(39.6=60.0)
C2:
PF0063014=Filamin=FE(6.0=100),PF0765312=SH3_2=PD(30.2=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTATGGCTTCTACCTCA
R:
GCTGGGCTTCACTGCATCAC
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]