DreEX0084178 @ danRer10
Exon Skipping
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16386264-16398835:-
Coord C1 exon
chr2:16398726-16398835
Coord A exon
chr2:16394798-16394899
Coord C2 exon
chr2:16386264-16386355
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCCCATTTTCCATTTCAGATC
3' ss Score
12.87
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGGTCCAGCGGGTTCTACCTCACCCACCAACAGGGACAGAGTGGATTTGAGTTCCTATTCAAGACGAAAGAGCTGAAGAAGAAATGGCTGGACCAGTTTGAGATGGCTAT
Seq A exon
ATCTAATATTCGACCAGAAAACGCCACGTTTAACTCTCACCACTTCAGAATGCACACTTTCGAGAGGGCCACCACCTGCAGCTCCTGTCGTATGCTACTCAG
Seq C2 exon
GGGGATTTTTAACCAAGGCTACCTTTGTCCTAAATGTGGAAACGGGGCTCATAAGGGCTGTCTGGGTAAACTGGGAGTCTGTGGAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962-'15-17,'15-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.0=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(41.2=60.0),PF0063014=Filamin=PU(4.3=22.9)
C2:
PF0013017=C1_1=PD(56.9=93.5),PF144461=Prok-RING_1=FE(55.6=100),PF0063014=Filamin=PU(0.7=3.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCAGCGGGTTCTACC
R:
CTGTCCTTCCACAGACTCCCA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]