RnoEX0097885 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212429361-212472018:+
Coord C1 exon
chr2:212429361-212429470
Coord A exon
chr2:212471565-212471666
Coord C2 exon
chr2:212471918-212472018
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGACTTTCCCCTTTTTGCAGATC
3' ss Score
11.95
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGGTCTTATGGCTTCTACCTCATCCATACCCAAGGACAAAATGGGCTGGAATTTTATTGCAAAACAAAAGATTTAAAGAAAAAATGGCTGGAACAGTTTGAAATGGCTTT
Seq A exon
ATCCAACATAAGGCCGGACTATGCAGACTCCAATTTCCATGACTTCAAGATGCACACATTCACTCGGGTGACATCCTGTAGGGTCTGCCAAATGCTCCTGAG
Seq C2 exon
GGGGACATTTTATCAAGGCTACTTATGTTTTAAGTGTGGAGCAAAAGCGCATAAAGAATGTTTGGGAAGAGTAGACAATTGTGGCAGAGTTAATTCCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'20-21,'20-20,23-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.6=100),PF0063014=Filamin=PU(10.2=67.6)
A:
PF0016924=PH=PD(1.0=2.9),PF0063014=Filamin=FE(14.0=100),PF0013017=C1_1=PU(39.6=60.0)
C2:
PF0063014=Filamin=FE(14.0=100),PF0013017=C1_1=PD(58.5=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTATGGCTTCTACCTCA
R:
CAACGGAATTAACTCTGCCACA
Band lengths:
211-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]