GgaEX1062992 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1050071-1068683:-
Coord C1 exon
chr8:1068574-1068683
Coord A exon
chr8:1052731-1052832
Coord C2 exon
chr8:1050071-1050171
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGTGGATTTTCTTATTTTAGGTC
3' ss Score
8.38
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGGTCTTATGGCTTCTACCTCATTCATATCCAAGGTCAAAATGGTTTAGAAGTTTATTGCAAAACTAAAGATTTGAAGAAAAAATGGCTTGAACAATTTCAGATGGCTCT
Seq A exon
GTCAAATATACGGCCAGATTATGCGGACACAAGCTTTCATGAGTTCAAAATGCATACTTTCAGTCGTGTGACGTCCTGCAAAGTCTGTCAAATGCTTCTTAG
Seq C2 exon
GGGAACATTTTATCAAGGCTATTTATGCTCTAAGTGTGGAGCTGGAGCGCACAAAGAATGTTTAGGAAGATTAGACAATTGTGGCAGAGCTAATTCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'19-24,'19-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.3=100),PF0063014=Filamin=FE(10.3=100)
A:
PF0016924=PH=PD(1.0=2.9),PF0013017=C1_1=PU(39.6=60.0),PF144461=Prok-RING_1=PU(24.1=37.1),PF0063014=Filamin=FE(9.7=100)
C2:
PF0013017=C1_1=PD(58.5=88.6),PF144461=Prok-RING_1=FE(63.0=100),PF0063014=Filamin=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTATGGCTTCTACCTCA
R:
CACCTGAATTAGCTCTGCCACA
Band lengths:
211-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]