MmuEX0051290 @ mm10
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109528275-109574131:+
Coord C1 exon
chr3:109528275-109528384
Coord A exon
chr3:109562743-109562844
Coord C2 exon
chr3:109574106-109574131
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGACTTTCCCCTTTTTGCAGATC
3' ss Score
11.95
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TGGTCTTATGGCTTCTACCTCATCCATACCCAAGGACAAAATGGGTTAGAATTTTATTGCAAAACAAAAGATTTAAAGAAAAAATGGCTGGAACAGTTTGAAATGGCTCT
Seq A exon
ATCCAACATAAGGCCAGACTATGCAGACTCCAATTTCCATGATTTCAAGATGCACACCTTCACTCGGGTGACATCCTGCAGGGTCTGCCAGATGCTCCTGAG
Seq C2 exon
AACAAGGGCCATTCAAACCACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721_MULTIEX1-1/4=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.920
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.6=100),PF0063014=Filamin=PU(10.9=73.0)
A:
PF0016924=PH=PD(1.0=2.9),PF0063014=Filamin=FE(14.0=100),PF0013017=C1_1=PU(39.6=60.0)
C2:
PF0063014=Filamin=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTATGGCTTCTACCTCA
R:
CTGGTGGTTTGAATGGCCCTT
Band lengths:
134-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types