GgaEX1062991 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1009567-1063532:-
Coord C1 exon
chr8:1063400-1063532
Coord A exon
chr8:1062964-1063073
Coord C2 exon
chr8:1009567-1009632
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGCCTGTCTTTTTCTACAGTGG
3' ss Score
9.84
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCATATCTTTTTGTTTGATCTGGCTGTAATTGTTTGCAAGCGGAGAGGTGATAATTACGAAATGAAGGAAATAATAGATCTTCAGAAATACAAAATTACTAATAACCCCACTACTGATAAAGAAAATAAGAAG
Seq A exon
TGGTCTTATGGCTTCTACCTCATTCATATCCAAGGTCAAAATGGTTTAGAAGTTTATTGCAAAACTAAAGATTTGAAGAAAAAATGGCTTGAACAATTTCAGATGGCTCT
Seq C2 exon
GGCAGAAATTTAACGACAGGAGAACTTGGCTTCTTCCCAAGTGATGCAGTGAAGCCCAGCCCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-13/26=12-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(12.6=100),PF0016924=PH=FE(43.1=100)
A:
PF0063014=Filamin=FE(10.3=100),PF0016924=PH=FE(35.3=100)
C2:
PF0063014=Filamin=FE(6.0=100),PF0765312=SH3_2=PD(30.2=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTTTGTTTGATCTGGCTGT
R:
CAAGGGCTGGGCTTCACTG
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]