DreEX6095619 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29612757-29619173:-
Coord C1 exon
chr24:29619150-29619173
Coord A exon
chr24:29617516-29617625
Coord C2 exon
chr24:29612757-29612858
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGATGTTCTGTGTCTTCCAGTGG
3' ss Score
9.26
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
AAAAATAACAAACAAAACAAAACA
Seq A exon
TGGTGCCATGGATTCTACCTCACACACAACCAGGGTCAAAACGGCTTTGAGTTCTTCTTCAAAACCAAGGAGCTAAAGAAGAAATGGCAGGAGCAGTTTGGCATGGCATT
Seq C2 exon
ATCGAACATCTGTCCAGAGAGCGGGAAATGTAATTTCCATGAGTTCCGCATGCACACCTTTGAGACAACCACATCCTGCAGCTCATGTGAAATGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'20-25,'20-24,21-25=AN
Average complexity
A_C3
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(6.6=100)
A:
PF0016924=PH=FE(34.0=100)
C2:
PF0016924=PH=PD(0.9=2.9),PF0013017=C1_1=PU(39.6=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]