RnoEX6011168 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212428583-212471666:+
Coord C1 exon
chr2:212428583-212428715
Coord A exon
chr2:212429361-212429470
Coord C2 exon
chr2:212471565-212471666
Length
110 bp
Sequences
Splice sites
3' ss Seq
AAGAATATTCATTTTCACAGTGG
3' ss Score
3.87
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GCATATCTTCTTATTCGATCTGGCAGTGATTGTCTGTAAAAGGAAAGGGGATAACTACGAGATGAAGGAAATAATAGATCTCCAGCAGTACAAGATCGCCAACAACCCTACCACGGATAAAGAGAATAAAAAG
Seq A exon
TGGTCTTATGGCTTCTACCTCATCCATACCCAAGGACAAAATGGGCTGGAATTTTATTGCAAAACAAAAGATTTAAAGAAAAAATGGCTGGAACAGTTTGAAATGGCTTT
Seq C2 exon
ATCCAACATAAGGCCGGACTATGCAGACTCCAATTTCCATGACTTCAAGATGCACACATTCACTCGGGTGACATCCTGTAGGGTCTGCCAAATGCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'19-20,'19-17,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0063014=Filamin=FE(13.7=100),PF0016924=PH=FE(43.6=100)
A:
PF0016924=PH=FE(35.6=100),PF0063014=Filamin=PU(10.2=67.6)
C2:
PF0016924=PH=PD(1.0=2.9),PF0063014=Filamin=FE(14.0=100),PF0013017=C1_1=PU(39.6=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATATCTTCTTATTCGATCTGGCA
R:
GCATTTGGCAGACCCTACAGG
Band lengths:
228-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]