BtaEX0039580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35658872-35702467:+
Coord C1 exon
chr3:35658872-35659004
Coord A exon
chr3:35659707-35659816
Coord C2 exon
chr3:35702366-35702467
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGGAATATTAATTTTAACAGTGG
3' ss Score
1.78
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GCATATCTTCTTATTTGATCTGGCAGTGATTGTATGTAAAAGGAAAGGTGATAACTATGAAATGAAGGAAATAATAGATCTTCAGCAGTACAAAATAGCCAACAATCCTACAACTGATAAAGAAAATAAAAAG
Seq A exon
TGGTCTTATGGCTTCTACCTCATCCATATCCAAGGACAAAATGGGTTAGAATTTTATTGCAAAACAAAAGATTTAAAGAAAAAATGGCTGGAACAGTTTGAAATGGCTTT
Seq C2 exon
ATCCAACATAAGACCAGACTATGCAGACTCCAACTTCCACGAGTTCAAGATGCACACCTTCACCCGGGTTACATCCTGCAGAGTCTGCCAGATGCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'19-24,'19-21,20-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.6=100)
A:
PF0016924=PH=FE(35.6=100),PF0063014=Filamin=PU(10.2=67.6)
C2:
PF0016924=PH=PD(1.0=2.9),PF0063014=Filamin=FE(13.8=100),PF0013017=C1_1=PU(39.6=60.0),PF144461=Prok-RING_1=PU(25.5=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATATCTTCTTATTTGATCTGGCA
R:
GACTCTGCAGGATGTAACCCG
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development