MmuEX6080562 @ mm10
Exon Skipping
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:31285626-31288058:+
Coord C1 exon
chr12:31285626-31285746
Coord A exon
chr12:31287464-31287604
Coord C2 exon
chr12:31287879-31288058
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTGTCACTTTGACATGGCAGTCT
3' ss Score
2.77
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
GTTCACGGGCACTGCATGTGCAGACACAACACCAAAGGCCTGAACTGTGAGCTGTGCATGGATTTCTACCACGATTTGCCGTGGAGACCTGCTGAAGGCCGGAACAGCAACGCCTGCAAAA
Seq A exon
TCTTCCTGGCTACTGGCAACGTCAGCGGGGGAGTGTGTGATAACTGTCAGCACAACACCATGGGGCGCAACTGTGAACAGTGCAAACCGTTCTACTTCCAGCACCCTGAGAGGGACATCCGGGACCCCAATCTCTGTGAAC
Seq C2 exon
CATGTACCTGTGACCCAGCTGGTTCTGAGAATGGCGGGATCTGTGATGGGTACACTGATTTTTCTGTGGGTCTCATTGCTGGTCAGTGTCGGTGCAAATTGCACGTGGAGGGAGAGCGCTGTGATGTTTGTAAAGAAGGCTTCTACGACTTAAGTGCTGAAGACCCGTATGGTTGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900-'22-19,'22-18,23-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACTGTGAGCTGTGCAT
R:
CCATACGGGTCTTCAGCACTT
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types